文献类型： 外文期刊
作者： Liu, Hai-Ping 1 ; Xiao, Shi-Jun 1 ; Wu, Nan 3 ; Wang, Di 3 ; Liu, Yan-Chao 1 ; Zhou, Chao-Wei 1 ; Liu, Qi-Yong 1 ; Yang, 1 ;
作者机构： 1.Tibet Acad Agr & Anim Husb Sci, Inst Fisheries Sci, Lhasa 850002, Peoples R China
2.Wuhan Univ Technol, Sch Comp Sci & Technol, Wuhan, Hubei, Peoples R China
3.Novogene Bioinformat Inst, Beijing, Peoples R China
4.Novogene Bioinformat
期刊名称：SCIENTIFIC DATA （ 影响因子：6.444； 五年影响因子：9.051 ）
ISSN： 2052-4463
年卷期： 2019 年 6 卷
页码：
收录情况： SCI
摘要： Animal genomes in the Qinghai-Tibetan Plateau provide valuable resources for scientists to understand the molecular mechanism of environmental adaptation. Tibetan fish species play essential roles in the local ecology; however, the genomic information for native fishes was still insufficient. Oxygymnocypris stewartii, belonging to Oxygymnocypris genus, Schizothoracinae subfamily, is a native fish in the Tibetan plateau living within the elevation from roughly 3,000 m to 4,200 m. In this report, PacBio and Illumina sequencing platform were used to generate similar to 385.3 Gb genomic sequencing data. A genome of about 1,849.2 Mb was obtained with a contig N50 length of 257.1 kb. More than 44.5% of the genome were identified as repetitive elements, and 46,400 protein-coding genes were annotated in the genome. The assembled genome can be used as a reference for future population genetic studies of O. stewartii and will improve our understanding of high altitude adaptation of fishes in the Qinghai-Tibetan Plateau.
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