Whole-Genome Analyses Reveal Genomic Characteristics and Selection Signatures of Lincang Humped Cattle at the China-Myanmar Border
文献类型： 外文期刊
作者： Sun, Luyang 1 ; Qu, Kaixing 3 ; Ma, Xiaohui 2 ; Hanif, Quratulain 4 ; Zhang, Jicai 1 ; Liu, Jianyong 1 ; Chen, Ningbo 2 ; Suolang, Quji 5 ; Lei, Chuzhao 2 ; Huang, Bizhi 1 ;
作者机构： 1.Yunnan Acad Grassland & Anim Sci, Kunming, Yunnan, Peoples R China
2.Northwest A&F Univ, Coll Anim Sci & Technol, Key Lab Anim Genet Breeding & Reprod Shaanxi Prov, Yangling, Shaanxi, Peoples R China
3.Chuxiong Normal Univ, Acad Sci & Technol, Chuxiong, Peoples R China
4.Natl Inst Biotechnol & Genet Engn, Faisalabad, Pakistan
5.Tibet Acad Agr & Anim Husb Sci, Inst Anim Sci, Lhasa, Peoples R China
关键词： whole-genome resequencing; Lincang humped cattle; genetic characteristics; selection signatures; HELB
期刊名称：FRONTIERS IN GENETICS （ 影响因子：4.772； 五年影响因子：4.933 ）
ISSN：
年卷期： 2022 年 13 卷
页码：
收录情况： SCI
摘要： The location on the Yunnan border with Myanmar and its unique cultural landscape has shaped Lincang humped cattle over time. In the current study, we investigated the genetic characteristics of 22 Lincang humped cattle using whole-genome resequencing data. We found that Lincang humped cattle derived from both Indian indicine and Chinese indicine cattle depicted higher levels of genomic diversity. Based on genome-wide scans, candidate genomic regions were identified that were potentially involved in local thermal and humid environmental adaptions, including genes associated with the body size (TCF12, SENP2, KIF1C, and PFN1), immunity (LIPH, IRAK3, GZMM, and ELANE), and heat tolerance (MED16, DNAJC8, HSPA4, FILIP1 L, HELB, BCL2L1, and TPX2). Missense mutations were detected in candidate genes IRAK3, HSPA4, and HELB. Interestingly, eight missense mutations observed in the HELB gene were specific to the indicine cattle pedigree. These mutations may reveal differences between indicine and taurine cattle adapted to variable climatic conditions. Our research provides new insights into the genetic characteristics of Lincang humped cattle representing Lincang and Pu'er areas as an important channel for the migration of Indian indicine from domestication centers toward southwestern China.
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